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Daniel Noguera

Daniel Noguera

Wisconsin Distinguished Professor

My students and I work on the area of Environmental Biotechnology within Environmental Engineering. The current major areas of research are (i) bioenergy, (ii) biological nutrient removal during wastewater treatment, and (iii) anaerobic digestion.

Within a multidisciplinary setting at the Great Lakes Bioenergy Research Center, my bioenergy research is related to the engineering of microorganisms to produce valuable chemicals from renewable resources such as lignin and several other agroindustrial residues.

Our research on biological nutrient removal seeks to develop new treatment processes with reduced energy requirements. We are primarily focused on the development of efficient enhanced biological phosphorus removal (EBPR) and simultaneous nitrification/denitrification under low dissolved oxygen conditions.

Research on anaerobic digestion focuses on modifying the microbial communities to improve the quality of biogas generated during methanogenesis, and on using anaerobic fermentation to gain value out of organic residues.

Department

Civil & Environmental Engineering

Contact

3204, Engineering Hall
1415 Engineering Dr
Madison, WI

  • PhD 1996, Univ. of Illinois-Urbana Champaign
  • MS 1991, Univ. of Illinois-Urbana Champaign
  • MS 1989, Univ. of Los Andes
  • BS 1987, Univ. of Los Andes

  • Environmental engineering
  • bioenergy
  • biotechnology
  • microbial ecology
  • biological nutrient removal
  • bioinformatics
  • lignin biodegradation pathways
  • anaerobic digestion

  • 2020 University of Wisconsin System, Renewal of Wisconsin Distinguished Professorship
  • 2015 University of Wisconsin System, Renewal of Wisconsin Distinguished Professorship
  • 2010 Central States Water Environment Association, Bill Boyle Educator of the Year
  • 2010 Water Environment Federation, Fair Distinguished Engineering Educator Award
  • 2010 University of Wisconsin System, Wisconsin Distinguished Professorship
  • 2006 Wisconsin Water Association (WWA), Research Award
  • 2005 Water Environment Research Foundation, Paul L. Busch Award
  • 2004 American Water Works Association (AWWA) Engineering & Construction Division, Best Paper Award
  • 2004 Water Environment Federation, Harrison Prescott Eddy Medal for Outstanding Contribution to Wastewater Principles/Processes Research
  • 2004 American Water Works Association (AWWA), Publications Award for the most notable contribution to the science of public water supply development through a paper published by the Association
  • 2002 Association of Environmental Engineering and Science Professors (AEESP), Distinguished Service Award
  • 2002 Graduate School, University of Wisconsin-Madison, Vilas Associate
  • 1999 National Science Foundation, NSF CAREER Award
  • 1997 Samuel C. Johnson Distinguished Fellowship
  • 1992 James M. Montgomery and Association of Environmental Engineering and Science Professors (AEESP), M.S. Thesis Award

  • Kim, B., Perez, J. M., Karlen, S. D., Coplien, J., Donohue, T. J., & Noguera, D. (2024). Achieving high productivity of 2-pyrone-4, 6-dicarboxylic acid from aqueous aromatic streams with Novosphingobium aromaticivorans. Green Chemistry.
  • Myers, K. S., Place, M., Gasch, A. P., Noguera, D., & Donohue, T. J. (2024). Auto-MuRCiS: a streamlined software package for analysis of multiplex, randomized CRISPR interference sequencing data. Microbiology Resource Announcements, e00356--24.
  • Metz, F., Olsen, A. M., Lu, F., Myers, K. S., Allemann, M. N., Michener, J. K., Noguera, D., & Donohue, T. J. (2024). Catabolism of $beta$-5 linked aromatics by Novosphingobium aromaticivorans. mBio, e01718--24.
  • Vilbert, A. C., Kontur, W. S., Gille, D., Noguera, D., & Donohue, T. J. (2024). Engineering Novosphingobium aromaticivorans to produce cis, cis-muconic acid from biomass aromatics. Applied and Environmental Microbiology, 90(1), e01660--23.
  • Walters, K. A., Myers, K. S., Donohue, T. J., & Noguera, D. (2024). Metagenome-assembled genomes from microbiomes fermenting dairy coproducts. Microbiology Resource Announcements, e00173--24.
  • Stewart, R. D., Myers, K. S., Amstadt, C., Seib, M., McMahon, K. D., & Noguera, D. (2024). Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration. Msystems, 9(3), e01188--23.
  • Sener, C., Perez, M., Umana, G., Karlen, S., Maravelias, C., Ralph, J., Donohue, T. J., & Noguera, D. (2023). Advances in the Biomass-to-Bioproduct Processing Chain to Produce 2-Pyrone-4, 6-Dicarboxylic Acid Via Reductive Catalytic Fractionation Followed By Microbial Funneling. In 2023 AIChE Annual Meeting.
  • Hall, B. W., Bingman, C. A., Fox, B. G., Noguera, D., & Donohue, T. J. (2023). A broad specificity $beta$-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including $gamma$-valerolactone. Journal of Biological Chemistry, 299(1).
  • Walters, K. A., Mohan, G., Myers, K. S., Ingle, A. T., Donohue, T. J., & Noguera, D. (2023). A metagenome-level analysis of a microbial community fermenting ultra-filtered milk permeate. Frontiers in Bioengineering and Biotechnology, 11, 1173656.
  • Alberge, Franccois,, Lakey, B. D., Schaub, R. E., Dohnalkova, A. C., Lemmer, K. C., Dillard, J. P., Noguera, D., & Donohue, T. J. (2023). A previously uncharacterized divisome-associated lipoprotein, DalA, is needed for normal cell division in Rhodobacterales. Mbio, 14(4), e01203--23.

  • CIV ENGR 699 - Independent Study (Spring 2025)
  • CIV ENGR 821 - Environmental Engineering: Biological Treatment Processes (Spring 2025)
  • CIV ENGR 890 - Pre-Dissertator's Research (Spring 2025)
  • CIV ENGR 322 - Environmental Engineering Processes (Fall 2024)
  • CIV ENGR 699 - Independent Study (Fall 2024)
  • CIV ENGR 790 - Master's Research or Thesis (Fall 2024)
  • CIV ENGR 890 - Pre-Dissertator's Research (Fall 2024)
  • CIV ENGR 699 - Independent Study (Summer 2024)
  • CIV ENGR 790 - Master's Research or Thesis (Summer 2024)
  • CIV ENGR 890 - Pre-Dissertator's Research (Summer 2024)
  • CIV ENGR 699 - Independent Study (Spring 2024)
  • CIV ENGR 721 - Biological Principles of Environmental Engineering (Spring 2024)
  • CIV ENGR 790 - Master's Research or Thesis (Spring 2024)
  • CIV ENGR 890 - Pre-Dissertator's Research (Spring 2024)
  • CIV ENGR 699 - Independent Study (Fall 2023)
  • CIV ENGR 790 - Master's Research or Thesis (Fall 2023)
  • CIV ENGR 821 - Environmental Engineering: Biological Treatment Processes (Fall 2023)
  • CIV ENGR 890 - Pre-Dissertator's Research (Fall 2023)
  • CIV ENGR 790 - Master's Research or Thesis (Summer 2023)